codegithubka · codegithubka · Jan 31, 2026 · Jan 30, 2026 · Jan 30, 2026 · Jan 30, 2026
diff --git a/.DS_Store b/.DS_Store
diff --git a/.gitignore b/.gitignore
@@ -12,12 +12,4 @@ results/
 data/
 .pytest_cache/
 
-.DS_Store
-
-hpc_data/phase4_18735304
-
-hpc_data/phase6_18780164
-
-
-hpc_data/**/*.jsonl
-hpc_data/**/*.jsonl
+.DS_Store/
diff --git a/README.md b/README.md
@@ -290,7 +290,3 @@ Metadata files (`phase{N}_metadata.json`) accompany each results file with confi
 **Optional:**
 - matplotlib (visualization)
 - scipy (additional analysis)
-
----
-
-## References
diff --git a/docs/GEN_AI.md b/docs/GEN_AI.md
diff --git a/docs/HPC_GUIDE.md b/docs/HPC_GUIDE.md
diff --git a/docs/experiments.html b/docs/experiments.html
diff --git a/docs/experiments.md b/docs/experiments.md
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/models/CA.html b/docs/models/CA.html
diff --git a/docs/models/config.html b/docs/models/config.html
diff --git a/docs/models/numba_optimized.html b/docs/models/numba_optimized.html
diff --git a/docs/search.js b/docs/search.js