+
+
+
339 integer ,
intent(in) :: t_step
-
341 integer :: ifile, ierr, data_size, filetype, stride
-
342 integer ,
dimension(MPI_STATUS_SIZE) :: status
-
-
344 integer(KIND=MPI_OFFSET_KIND) :: disp
-
345 integer(KIND=MPI_OFFSET_KIND) :: m_mok, n_mok, p_mok
-
346 integer(KIND=MPI_OFFSET_KIND) :: wp_mok, var_mok, str_mok
-
347 integer(KIND=MPI_OFFSET_KIND) :: nvars_mok
-
348 integer(KIND=MPI_OFFSET_KIND) :: mok
-
349 integer(kind=MPI_OFFSET_KIND) :: offset
-
350 real (wp) :: delx, dely, delz
-
-
352 character(LEN=path_len + 2*name_len) :: file_loc
-
353 logical :: file_exist
-
-
355 character(len=10) :: t_step_string
-
-
+
+
+
343 real (wp),
allocatable ,
dimension(:) :: x_cb_glb, y_cb_glb, z_cb_glb
+
+
345 integer :: ifile, ierr, data_size, filetype, stride
+
346 integer ,
dimension(MPI_STATUS_SIZE) :: status
+
+
348 integer(KIND=MPI_OFFSET_KIND) :: disp
+
349 integer(KIND=MPI_OFFSET_KIND) :: m_mok, n_mok, p_mok
+
350 integer(KIND=MPI_OFFSET_KIND) :: wp_mok, var_mok, str_mok
+
351 integer(KIND=MPI_OFFSET_KIND) :: nvars_mok
+
352 integer(KIND=MPI_OFFSET_KIND) :: mok
+
353 integer(kind=MPI_OFFSET_KIND) :: offset
+
354 real (wp) :: delx, dely, delz
+
+
356 character(LEN=path_len + 2*name_len) :: file_loc
+
357 logical :: file_exist
-
359 allocate (x_cb_glb(-1:
m_glb ))
-
360 allocate (y_cb_glb(-1:
n_glb ))
-
361 allocate (z_cb_glb(-1:
p_glb ))
+
359 character(len=10) :: t_step_string
+
+
-
-
-
-
-
-
-
-
-
371 inquire (file=trim(file_loc), exist=file_exist)
+
363 allocate (x_cb_glb(-1:
m_glb ))
+
364 allocate (y_cb_glb(-1:
n_glb ))
+
365 allocate (z_cb_glb(-1:
p_glb ))
+
+
+
+
+
+
-
-
374 data_size =
m_glb + 2
-
375 call mpi_file_open(mpi_comm_world, file_loc, mpi_mode_rdonly,
mpi_info_int , ifile, ierr)
+
+
+
375 inquire (file=trim(file_loc), exist=file_exist)
-
377 call mpi_type_vector(data_size, 1, stride, mpi_p, filetype, ierr)
-
378 call mpi_type_commit(filetype, ierr)
-
-
-
381 call mpi_file_set_view(ifile, offset, mpi_p, filetype,
'native' ,
mpi_info_int , ierr)
-
-
383 call mpi_file_read(ifile, x_cb_glb, data_size, mpi_p, status, ierr)
-
384 call mpi_file_close(ifile, ierr)
-
-
386 call s_mpi_abort (
'File ' //trim(file_loc)//
' is missing. Exiting.' )
-
-
-
-
-
-
-
-
-
-
-
-
-
399 inquire (file=trim(file_loc), exist=file_exist)
-
-
-
402 data_size =
n_glb + 2
-
403 call mpi_file_open(mpi_comm_world, file_loc, mpi_mode_rdonly,
mpi_info_int , ifile, ierr)
+
+
378 data_size =
m_glb + 2
+
379 call mpi_file_open(mpi_comm_world, file_loc, mpi_mode_rdonly,
mpi_info_int , ifile, ierr)
+
+
381 call mpi_type_vector(data_size, 1, stride, mpi_p, filetype, ierr)
+
382 call mpi_type_commit(filetype, ierr)
+
+
+
385 call mpi_file_set_view(ifile, offset, mpi_p, filetype,
'native' ,
mpi_info_int , ierr)
+
+
387 call mpi_file_read(ifile, x_cb_glb, data_size, mpi_p, status, ierr)
+
388 call mpi_file_close(ifile, ierr)
+
+
390 call s_mpi_abort (
'File ' //trim(file_loc)//
' is missing. Exiting.' )
+
+
+
+
+
+
+
+
+
+
+
+
+
403 inquire (file=trim(file_loc), exist=file_exist)
-
405 call mpi_type_vector(data_size, 1, stride, mpi_p, filetype, ierr)
-
406 call mpi_type_commit(filetype, ierr)
-
-
-
409 call mpi_file_set_view(ifile, offset, mpi_p, filetype,
'native' ,
mpi_info_int , ierr)
-
-
411 call mpi_file_read(ifile, y_cb_glb, data_size, mpi_p, status, ierr)
-
412 call mpi_file_close(ifile, ierr)
-
-
414 call s_mpi_abort (
'File ' //trim(file_loc)//
' is missing. Exiting.' )
-
-
-
-
-
-
-
-
-
-
-
-
-
427 inquire (file=trim(file_loc), exist=file_exist)
-
-
-
430 data_size =
p_glb + 2
-
431 call mpi_file_open(mpi_comm_world, file_loc, mpi_mode_rdonly,
mpi_info_int , ifile, ierr)
+
+
406 data_size =
n_glb + 2
+
407 call mpi_file_open(mpi_comm_world, file_loc, mpi_mode_rdonly,
mpi_info_int , ifile, ierr)
+
+
409 call mpi_type_vector(data_size, 1, stride, mpi_p, filetype, ierr)
+
410 call mpi_type_commit(filetype, ierr)
+
+
+
413 call mpi_file_set_view(ifile, offset, mpi_p, filetype,
'native' ,
mpi_info_int , ierr)
+
+
415 call mpi_file_read(ifile, y_cb_glb, data_size, mpi_p, status, ierr)
+
416 call mpi_file_close(ifile, ierr)
+
+
418 call s_mpi_abort (
'File ' //trim(file_loc)//
' is missing. Exiting.' )
+
+
+
+
+
+
+
+
+
+
+
+
+
431 inquire (file=trim(file_loc), exist=file_exist)
-
433 call mpi_type_vector(data_size, 1, stride, mpi_p, filetype, ierr)
-
434 call mpi_type_commit(filetype, ierr)
-
-
-
437 call mpi_file_set_view(ifile, offset, mpi_p, filetype,
'native' ,
mpi_info_int , ierr)
-
-
439 call mpi_file_read(ifile, z_cb_glb, data_size, mpi_p, status, ierr)
-
440 call mpi_file_close(ifile, ierr)
-
-
442 call s_mpi_abort (
'File ' //trim(file_loc)//
' is missing. Exiting.' )
-
-
-
-
-
-
-
-
-
-
-
-
-
-
456 deallocate (x_cb_glb, y_cb_glb, z_cb_glb)
+
+
434 data_size =
p_glb + 2
+
435 call mpi_file_open(mpi_comm_world, file_loc, mpi_mode_rdonly,
mpi_info_int , ifile, ierr)
+
+
437 call mpi_type_vector(data_size, 1, stride, mpi_p, filetype, ierr)
+
438 call mpi_type_commit(filetype, ierr)
+
+
+
441 call mpi_file_set_view(ifile, offset, mpi_p, filetype,
'native' ,
mpi_info_int , ierr)
+
+
443 call mpi_file_read(ifile, z_cb_glb, data_size, mpi_p, status, ierr)
+
444 call mpi_file_close(ifile, ierr)
+
+
446 call s_mpi_abort (
'File ' //trim(file_loc)//
' is missing. Exiting.' )
+
+
+
+
+
+
+
+
+
+
-
-
-
-
-
-
-
-
-
+
-
479 integer :: ifile, ierr, data_size
-
480 integer ,
dimension(MPI_STATUS_SIZE) :: status
-
481 integer(KIND=MPI_OFFSET_KIND) :: disp, var_mok
-
482 character(LEN=path_len + 2*name_len) :: file_loc
-
483 logical :: file_exist
-
484 character(len=10) :: t_step_string
-
-
-
-
-
-
490 write (file_loc,
'(I0,A1,I7.7,A)' ) t_step,
'_' ,
proc_rank ,
'.dat'
-
491 file_loc = trim(
case_dir )//
'/restart_data/lustre_' //trim(t_step_string)//trim(
mpiiofs )//trim(file_loc)
-
492 inquire (file=trim(file_loc), exist=file_exist)
-
-
-
495 call mpi_file_open(mpi_comm_self, file_loc, mpi_mode_rdonly,
mpi_info_int , ifile, ierr)
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
510 data_size = (
m + 3)*(
n + 3)*(
p + 3)
-
-
-
513 data_size = (
m + 1)*(
n + 1)*(
p + 1)
-
-
-
-
517 m_mok = int(
m_glb + 1, mpi_offset_kind)
-
518 n_mok = int(
n_glb + 1, mpi_offset_kind)
-
519 p_mok = int(
p_glb + 1, mpi_offset_kind)
-
520 wp_mok = int(8._wp, mpi_offset_kind)
-
521 mok = int(1._wp, mpi_offset_kind)
-
522 str_mok = int(name_len, mpi_offset_kind)
-
523 nvars_mok = int(
sys_size , mpi_offset_kind)
-
-
-
-
-
528 var_mok = int(i, mpi_offset_kind)
-
529 call mpi_file_read_all(ifile,
mpi_io_data %var(i)%sf, data_size*mpi_io_type, &
-
530 mpi_io_p, status, ierr)
-
-
-
-
534 var_mok = int(i, mpi_offset_kind)
-
535 call mpi_file_read_all(ifile,
mpi_io_data %var(i)%sf, data_size*mpi_io_type, &
-
536 mpi_io_p, status, ierr)
-
-
-
-
-
541 call mpi_file_close(ifile, ierr)
-
-
-
-
-
-
-
-
-
-
551 call s_mpi_abort (
'File ' //trim(file_loc)//
' is missing. Exiting.' )
-
-
-
-
555 write (file_loc,
'(I0,A)' ) t_step,
'.dat'
-
556 file_loc = trim(
case_dir )//
'/restart_data' //trim(
mpiiofs )//trim(file_loc)
-
557 inquire (file=trim(file_loc), exist=file_exist)
-
-
-
560 call mpi_file_open(mpi_comm_world, file_loc, mpi_mode_rdonly,
mpi_info_int , ifile, ierr)
-
-
-
-
-
-
566 var_mok = int(i, mpi_offset_kind)
+
479 integer ,
intent(in) :: t_step
+
480 integer(KIND=MPI_OFFSET_KIND) ,
intent(inout) :: m_mok, n_mok, p_mok
+
481 integer(KIND=MPI_OFFSET_KIND) ,
intent(inout) :: wp_mok, mok, str_mok, nvars_mok
+
+
483 integer :: ifile, ierr, data_size
+
484 integer ,
dimension(MPI_STATUS_SIZE) :: status
+
485 integer(KIND=MPI_OFFSET_KIND) :: disp, var_mok
+
486 character(LEN=path_len + 2*name_len) :: file_loc
+
487 logical :: file_exist
+
488 character(len=10) :: t_step_string
+
+
+
+
+
+
494 write (file_loc,
'(I0,A1,I7.7,A)' ) t_step,
'_' ,
proc_rank ,
'.dat'
+
495 file_loc = trim(
case_dir )//
'/restart_data/lustre_' //trim(t_step_string)//trim(
mpiiofs )//trim(file_loc)
+
496 inquire (file=trim(file_loc), exist=file_exist)
+
+
+
499 call mpi_file_open(mpi_comm_self, file_loc, mpi_mode_rdonly,
mpi_info_int , ifile, ierr)
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
514 data_size = (
m + 3)*(
n + 3)*(
p + 3)
+
+
+
517 data_size = (
m + 1)*(
n + 1)*(
p + 1)
+
+
+
+
521 m_mok = int(
m_glb + 1, mpi_offset_kind)
+
522 n_mok = int(
n_glb + 1, mpi_offset_kind)
+
523 p_mok = int(
p_glb + 1, mpi_offset_kind)
+
524 wp_mok = int(8._wp, mpi_offset_kind)
+
525 mok = int(1._wp, mpi_offset_kind)
+
526 str_mok = int(name_len, mpi_offset_kind)
+
527 nvars_mok = int(
sys_size , mpi_offset_kind)
+
+
+
+
+
532 var_mok = int(i, mpi_offset_kind)
+
533 call mpi_file_read_all(ifile,
mpi_io_data %var(i)%sf, data_size*mpi_io_type, &
+
534 mpi_io_p, status, ierr)
+
+
+
+
538 var_mok = int(i, mpi_offset_kind)
+
539 call mpi_file_read_all(ifile,
mpi_io_data %var(i)%sf, data_size*mpi_io_type, &
+
540 mpi_io_p, status, ierr)
+
+
+
+
+
545 call mpi_file_close(ifile, ierr)
+
+
+
+
+
+
+
+
+
+
555 call s_mpi_abort (
'File ' //trim(file_loc)//
' is missing. Exiting.' )
+
+
+
+
559 write (file_loc,
'(I0,A)' ) t_step,
'.dat'
+
560 file_loc = trim(
case_dir )//
'/restart_data' //trim(
mpiiofs )//trim(file_loc)
+
561 inquire (file=trim(file_loc), exist=file_exist)
+
+
+
564 call mpi_file_open(mpi_comm_world, file_loc, mpi_mode_rdonly,
mpi_info_int , ifile, ierr)
+
+
-
-
569 disp = m_mok*max(mok, n_mok)*max(mok, p_mok)*wp_mok*(var_mok - 1)
-
-
571 call mpi_file_set_view(ifile, disp, mpi_p,
mpi_io_data %view(i), &
-
-
573 call mpi_file_read_all(ifile,
mpi_io_data %var(i)%sf, data_size*mpi_io_type, &
-
574 mpi_io_p, status, ierr)
-
-
-
-
578 call mpi_file_close(ifile, ierr)
-
-
-
-
582 call s_mpi_abort (
'File ' //trim(file_loc)//
' is missing. Exiting.' )
-
-
+
+
+
570 var_mok = int(i, mpi_offset_kind)
+
+
+
573 disp = m_mok*max(mok, n_mok)*max(mok, p_mok)*wp_mok*(var_mok - 1)
+
+
575 call mpi_file_set_view(ifile, disp, mpi_p,
mpi_io_data %view(i), &
+
+
577 call mpi_file_read_all(ifile,
mpi_io_data %var(i)%sf, data_size*mpi_io_type, &
+
578 mpi_io_p, status, ierr)
+
+
+
+
582 call mpi_file_close(ifile, ierr)
+
+
+
+
586 call s_mpi_abort (
'File ' //trim(file_loc)//
' is missing. Exiting.' )
+
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
627 allocate (
bc_type (1, 1)%sf(0:0, 0:
n , 0:
p ))
-
628 allocate (
bc_type (1, 2)%sf(0:0, 0:
n , 0:
p ))
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
631 allocate (
bc_type (1, 1)%sf(0:0, 0:
n , 0:
p ))
+
632 allocate (
bc_type (1, 2)%sf(0:0, 0:
n , 0:
p ))
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
-
-
-
+
+
+
-
-
+
+
-
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
+
-
-
+
-
+
+
+
+
+
+
Noncharacteristic and processor boundary condition application for ghost cells and buffer regions.
subroutine, public s_read_parallel_boundary_condition_files(bc_type)
Reads boundary condition type and buffer data from per-rank parallel files using MPI I/O.
@@ -850,14 +854,14 @@
impure subroutine my_inquire(fileloc, dircheck)
Inquires on the existence of a directory.
-
+
-
-
+
+
-
+
@@ -870,6 +874,7 @@
logical, parameter chemistry
Chemistry modeling.
+
integer beta_idx
Index of lagrange bubbles beta.
real(wp), dimension(:), allocatable y_cc
integer proc_rank
Rank of the local processor.
@@ -885,6 +890,7 @@
real(wp), dimension(:), allocatable z_cb
integer num_dims
Number of spatial dimensions.
real(wp), dimension(:), allocatable x_cc
+
real(wp), dimension(:), allocatable x_cb
real(wp), dimension(:), allocatable dy
integer t_step_save
Interval between consecutive time-step directory.
diff --git a/post_process/m__start__up_8fpp_8f90_source.html b/post_process/m__start__up_8fpp_8f90_source.html
index f8df92ef6..1b531643f 100644
--- a/post_process/m__start__up_8fpp_8f90_source.html
+++ b/post_process/m__start__up_8fpp_8f90_source.html
@@ -1811,85 +1811,82 @@
1654 num_dims = 1 + min(1, n) + min(1, p)
-
-
-
1658 call s_mpi_initialize()
-
-
-
-
-
-
1664 if (proc_rank == 0)
then
-
1665 call s_assign_default_values_to_user_inputs()
-
-
-
-
1669 print
'(" Post-processing a ", I0, "x", I0, "x", I0, " case on ", I0, " rank(s)")' , m, n, p, num_procs
-
-
-
-
-
-
1675 call s_mpi_bcast_user_inputs()
-
1676 call s_initialize_parallel_io()
-
1677 call s_mpi_decompose_computational_domain()
-
1678 call s_check_inputs_fft()
-
-
-
-
-
-
-
+
+
1657 call s_mpi_initialize()
+
+
+
+
+
+
1663 if (proc_rank == 0)
then
+
1664 call s_assign_default_values_to_user_inputs()
+
+
+
+
1668 print
'(" Post-processing a ", I0, "x", I0, "x", I0, " case on ", I0, " rank(s)")' , m, n, p, num_procs
+
+
+
+
+
+
1674 call s_mpi_bcast_user_inputs()
+
1675 call s_initialize_parallel_io()
+
1676 call s_mpi_decompose_computational_domain()
+
1677 call s_check_inputs_fft()
+
+
+
+
+
-
-
1687 s_read_data_files => null()
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1704 if (
allocated (
en ))
deallocate (
en )
-
-
-
-
-
-
-
-
-
-
-
-
-
1717 call s_finalize_data_output_module()
-
1718 call s_finalize_derived_variables_module()
-
1719 call s_finalize_data_input_module()
-
1720 call s_finalize_variables_conversion_module()
-
1721 if (num_procs > 1)
then
-
1722 call s_finalize_mpi_proxy_module()
-
1723 call s_finalize_mpi_common_module()
-
-
1725 call s_finalize_global_parameters_module()
-
-
-
1728 call s_mpi_finalize()
-
-
-
-
+
+
1684 s_read_data_files => null()
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
1701 if (
allocated (
en ))
deallocate (
en )
+
+
+
+
+
+
+
+
+
+
+
+
+
1714 call s_finalize_data_output_module()
+
1715 call s_finalize_derived_variables_module()
+
1716 call s_finalize_data_input_module()
+
1717 call s_finalize_variables_conversion_module()
+
1718 if (num_procs > 1)
then
+
1719 call s_finalize_mpi_proxy_module()
+
1720 call s_finalize_mpi_common_module()
+
+
1722 call s_finalize_global_parameters_module()
+
+
+
1725 call s_mpi_finalize()
+
+
+
+
@@ -1909,10 +1906,10 @@
impure subroutine my_inquire(fileloc, dircheck)
Inquires on the existence of a directory.
impure subroutine s_create_directory(dir_name)
Creates a directory and all its parents if it does not exist.
-
+
-
+
@@ -2148,7 +2145,7 @@
subroutine s_mpi_transpose_x2y
Transpose 3-D complex data from x-pencil to y-pencil layout via MPI_Alltoall.
-
impure subroutine s_finalize_modules
Destroy FFTW plans, free MPI communicators, and finalize all post-process sub-modules.
+
impure subroutine s_finalize_modules
Destroy FFTW plans, free MPI communicators, and finalize all post-process sub-modules.
subroutine s_mpi_transpose_y2z
Transpose 3-D complex data from y-pencil to z-pencil layout via MPI_Alltoall.
real(wp), dimension(:, :, :), allocatable en_real
diff --git a/post_process/namespacem__checker.html b/post_process/namespacem__checker.html
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Functions/Subroutines
impure subroutine, public s_check_inputs Checks compatibility of parameters in the input file. Used by the post_process stage.
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impure subroutine s_check_inputs_output_format
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Checks constraints on output format parameters. impure subroutine, public s_check_inputs_fft Checks constraints on fft_wrt.
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diff --git a/post_process/namespacem__data__input.html b/post_process/namespacem__data__input.html
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